4NS5 | pdb_00004ns5

Crystal structure of human BS69 Bromo-Zinc finger-PWWP

• PDB DOI: https://doi.org/10.2210/pdb4NS5/pdb

• Classification: TRANSCRIPTION REGULATOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-11-28 Released: 2014-04-09 
• Deposition Author(s): Wang, J.C., Qin, S., Li, F.D., Li, S., Zhang, W., Wu, J.H., Shi, Y.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.251 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Literature

Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding.

Wang, J., Qin, S., Li, F., Li, S., Zhang, W., Peng, J., Zhang, Z., Gong, Q., Wu, J., Shi, Y.

(2014) Cell Res 24: 890-893

• PubMed: 24675531 
• DOI: https://doi.org/10.1038/cr.2014.38
• Primary Citation of Related Structures:  
  4NS5

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Organizational Affiliation: 
• Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China.
Biomedical Research Institute, Shenzhen-PKU-HKUST Medical Center, Shenzhen, Guangdong 518036, China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 27.36 kDa 
• Atom Count: 1,653 
• Modeled Residue Count: 185 
• Deposited Residue Count: 227 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger MYND domain-containing protein 11	A	227	Homo sapiens	Mutation(s): 0  Gene Names: ZMYND11, BS69
UniProt & NIH Common Fund Data Resources
Find proteins for Q15326 (Homo sapiens) Explore Q15326  Go to UniProtKB:  Q15326
PHAROS:  Q15326 GTEx:  ENSG00000015171

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.251 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.76	α = 90
b = 64.38	β = 90
c = 73.4	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-04-09 
Deposition Author(s): Wang, J.C., Qin, S., Li, F.D., Li, S., Zhang, W., Wu, J.H., Shi, Y.Y.

Revision History  

• Version 1.0: 2014-04-09
  Type: Initial release
  
• Version 1.1: 2014-11-12
  Changes: Database references
• Version 1.2: 2024-02-28
  Changes: Data collection, Database references, Derived calculations