4NPB

The crystal structure of thiol:disulfide interchange protein DsbC from Yersinia pestis CO92


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.147 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of thiol:disulfide interchange protein DsbC from Yersinia pestis CO92

Tan, K.Zhou, M.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein disulfide isomerase II
A, B
220Yersinia pestisMutation(s): 0 
Gene Names: dsbC
Find proteins for A0A0H2W928 (Yersinia pestis)
Go to UniProtKB:  A0A0H2W928
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SUC
Query on SUC

Download SDF File 
Download CCD File 
A
SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
 Ligand Interaction
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 90.894α = 90.00
b = 141.335β = 90.00
c = 41.153γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
SBC-Collectdata collection
HKL-3000phasing
WARPmodel building
MLPHAREphasing
HKL-3000data reduction
HKL-3000data scaling
ARPmodel building
DMmodel building
SHELXDphasing
DMphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-25
    Type: Initial release