4NLH | pdb_00004nlh

SKICH domain of human TAX1BP1

PDB DOI: https://doi.org/10.2210/pdb4NLH/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-11-14 Released: 2014-12-24
Deposition Author(s): Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.278 (Depositor), 0.276 (DCC)
R-Value Work:
0.238 (Depositor), 0.236 (DCC)
R-Value Observed:
0.241 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4NLH

This is version 1.1 of the entry. See complete history.

Literature

SKICH domain of human TAX1BP1

Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

To be published.

Macromolecule Content

Total Structure Weight: 31.41 kDa
Atom Count: 2,067
Modeled Residue Count: 225
Deposited Residue Count: 276
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tax1-binding protein 1	A, B	138	Homo sapiens	Mutation(s): 0 Gene Names: HUMAN TAX1BP1, PRO0105, T6BP, TAX1BP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q86VP1 (Homo sapiens) Explore Q86VP1 Go to UniProtKB: Q86VP1
PHAROS: Q86VP1 GTEx: ENSG00000106052
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q86VP1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.278 (Depositor), 0.276 (DCC)
R-Value Work: 0.238 (Depositor), 0.236 (DCC)
R-Value Observed: 0.241 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.16	α = 90
b = 64.02	β = 90
c = 101.68	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-12-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-12-24
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.