4NJ7

PB1 Domain of AtARF7 - SeMet Derivative


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.261 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.

Korasick, D.A.Westfall, C.S.Lee, S.G.Nanao, M.H.Dumas, R.Hagen, G.Guilfoyle, T.J.Jez, J.M.Strader, L.C.

(2014) Proc Natl Acad Sci U S A 111: 5427-5432

  • DOI: https://doi.org/10.1073/pnas.1400074111
  • Primary Citation of Related Structures:  
    4NJ6, 4NJ7

  • PubMed Abstract: 

    In plants, the AUXIN RESPONSE FACTOR (ARF) transcription factor family regulates gene expression in response to auxin. In the absence of auxin, ARF transcription factors are repressed by interaction with AUXIN/INDOLE 3-ACETIC ACID (Aux/IAA) proteins. Although the C termini of ARF and Aux/IAA proteins facilitate their homo- and heterooligomerization, the molecular basis for this interaction remained undefined. The crystal structure of the C-terminal interaction domain of Arabidopsis ARF7 reveals a Phox and Bem1p (PB1) domain that provides both positive and negative electrostatic interfaces for directional protein interaction. Mutation of interface residues in the ARF7 PB1 domain yields monomeric protein and abolishes interaction with both itself and IAA17. Expression of a stabilized Aux/IAA protein (i.e., IAA16) bearing PB1 mutations in Arabidopsis suggests a multimerization requirement for ARF protein repression, leading to a refined auxin-signaling model.


  • Organizational Affiliation

    Department of Biology, Washington University, St. Louis, MO 63130.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Auxin response factor 7
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
95Arabidopsis thalianaMutation(s): 3 
Gene Names: ARF7BIPIAA21IAA23IAA25NPH4TIR5At5g20730T1M15.130
UniProt
Find proteins for P93022 (Arabidopsis thaliana)
Explore P93022 
Go to UniProtKB:  P93022
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP93022
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.261 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.936α = 90
b = 150.936β = 90
c = 184.236γ = 120
Software Package:
Software NamePurpose
HKL-3000data collection
PHENIXmodel building
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-03-26
    Type: Initial release
  • Version 1.1: 2014-05-14
    Changes: Database references
  • Version 1.2: 2017-11-22
    Changes: Refinement description