4NF7 | pdb_00004nf7

Crystal structure of the GH5 family catalytic domain of Endo-1,4-beta-glucanase Cel5C from Butyrivibrio proteoclasticus.

• PDB DOI: https://doi.org/10.2210/pdb4NF7/pdb

• Classification: HYDROLASE
• Organism(s): Butyrivibrio proteoclasticus B316
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-10-30 Released: 2014-11-05 
• Deposition Author(s): Lott, J.S., Colbert, D.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 
  0.233 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Literature

Structural and functional characterisation of endo-1,4-beta-glucanase Cel5C from bovine rumen microbe Butyrivibrio proteoclasticus

Lott, J.S., Colbert, D.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 41.53 kDa 
• Atom Count: 3,016 
• Modeled Residue Count: 363 
• Deposited Residue Count: 363 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endo-1,4-beta-glucanase Cel5C	A	363	Butyrivibrio proteoclasticus B316	Mutation(s): 0  Gene Names: bpr_I1710, cel5C EC: 3.2.1.4
UniProt
Find proteins for E0RXM0 (Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316)) Explore E0RXM0  Go to UniProtKB:  E0RXM0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free:  0.233 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.89	α = 90
b = 68.89	β = 90
c = 175.64	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-11-05 
Deposition Author(s): Lott, J.S., Colbert, D.A.

Revision History  

• Version 1.0: 2014-11-05
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Refinement description
• Version 1.2: 2019-12-04
  Changes: Data collection, Database references
• Version 1.3: 2024-03-20
  Changes: Data collection, Database references