4N9F

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.265 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif

Guo, Y.Y.Dong, L.Y.Qiu, X.L.Wang, Y.S.Zhang, B.L.Liu, H.N.Yu, Y.Zang, Y.Yang, M.J.Huang, Z.W.

(2014) Nature 505: 229-233


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cullin-5311Homo sapiensMutation(s): 0 
Gene Names: CUL5VACM1
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Find proteins for Q93034 (Homo sapiens)
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PHAROS:  Q93034
GTEx:  ENSG00000166266 
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UniProt GroupQ93034
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription elongation factor B polypeptide 196Homo sapiensMutation(s): 0 
Gene Names: ELOCTCEB1
UniProt & NIH Common Fund Data Resources
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PHAROS:  Q15369
GTEx:  ENSG00000154582 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription elongation factor B polypeptide 2102Homo sapiensMutation(s): 0 
Gene Names: ELOBTCEB2
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GTEx:  ENSG00000103363 
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Core-binding factor subunit beta170Homo sapiensMutation(s): 0 
Gene Names: CBFBCBFbeta
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PHAROS:  Q13951
GTEx:  ENSG00000067955 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Virion infectivity factor176Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: vif
UniProt
Find proteins for P12504 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.265 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.925α = 65.51
b = 204.002β = 90.28
c = 247.866γ = 90.5
Software Package:
Software NamePurpose
HKL-2000data collection
PHASESphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-08
    Type: Initial release