4N9F

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.262 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif

Guo, Y.Y.Dong, L.Y.Qiu, X.L.Wang, Y.S.Zhang, B.L.Liu, H.N.Yu, Y.Zang, Y.Yang, M.J.Huang, Z.W.

(2014) Nature 505: 229-233


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cullin-5
U, C, I, O, V, f, l, r, x, 3, 9, w
311Homo sapiensMutation(s): 0 
Gene Names: CUL5 (VACM1)
Find proteins for Q93034 (Homo sapiens)
Go to Gene View: CUL5
Go to UniProtKB:  Q93034
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transcription elongation factor B polypeptide 1
Y, E, K, Q, Z, h, n, t, z, 5, T, B
96Homo sapiensMutation(s): 0 
Gene Names: ELOC (TCEB1)
Find proteins for Q15369 (Homo sapiens)
Go to Gene View: ELOC
Go to UniProtKB:  Q15369
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Transcription elongation factor B polypeptide 2
X, D, J, P, W, g, m, s, y, 4, e, H
102Homo sapiensMutation(s): 0 
Gene Names: ELOB (TCEB2)
Find proteins for Q15370 (Homo sapiens)
Go to Gene View: ELOB
Go to UniProtKB:  Q15370
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Core-binding factor subunit beta
a, F, L, R, c, i, o, u, 0, 6, k, N
170Homo sapiensMutation(s): 0 
Gene Names: CBFB
Find proteins for Q13951 (Homo sapiens)
Go to Gene View: CBFB
Go to UniProtKB:  Q13951
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Virion infectivity factor
b, G, M, S, d, j, p, v, 1, 7, q, 2
176Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: vif
Find proteins for P12504 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P12504
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
1, 2, 7, b, d, G, j, M, p, q, S, v
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.262 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 103.925α = 65.51
b = 204.002β = 90.28
c = 247.866γ = 90.50
Software Package:
Software NamePurpose
HKL-2000data collection
PHENIXrefinement
PHASESphasing
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-01-08
    Type: Initial release