Download MendeleyCrystal Structure of a C8-C4 Sn3 Inhibited Esterase B from Lactobacillus Rhamnosis
Colbert, D.A., D Bennett, M., J Lun, D., S Loo, T., F Anderson, B., E Norris, G.To be published.
4N5I
Crystal Structure of a C8-C4 Sn3 Inhibited Esterase B from Lactobacillus Rhamnosis
- PDB DOI: https://doi.org/10.2210/pdb4N5I/pdb
- Classification: HYDROLASE
- Organism(s): Lacticaseibacillus rhamnosus Lc 705
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2013-10-09 Released: 2014-04-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.215
- R-Value Work: 0.162
- R-Value Observed: 0.165
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Esterase/lipase | A [auth X] | 317 | Lacticaseibacillus rhamnosus Lc 705 | Mutation(s): 1 Gene Names: LC705_02872, LRH_10360 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2HD Query on 2HD | B [auth X] | (2R)-2,3-dibutoxypropyl (R)-octylphosphinate C19 H41 O4 P NQMHEQXQHWVUHF-LJQANCHMSA-N |  | ||
| ACT Query on ACT | C [auth X], D [auth X] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.215
- R-Value Work: 0.162
- R-Value Observed: 0.165
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 109.826 | α = 90 |
| b = 109.826 | β = 90 |
| c = 59.347 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
Entry History
Deposition Data
- Released Date: 2014-04-16 Deposition Author(s): Colbert, D.A., Bennett, M.D., Lun, D.J., Loo, T.S., Anderson, B.F., Norris, G.E.
Revision History (Full details and data files)
- Version 1.0: 2014-04-16
Type: Initial release - Version 1.1: 2018-01-24
Changes: Structure summary - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
