4N57

Crystal structure of aminoglycoside phosphotransferase APH(2'')-IVa ADP complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of aminoglycoside phosphotransferase APH(2'')-IVa ADP complex

Kaplan, E.Leban, N.Chaloin, L.Guichou, J.-F.Lionne, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
APH(2'')-Id
A, B
321Enterococcus casseliflavusMutation(s): 2 
Gene Names: aph(2'')-Id
Find proteins for O68183 (Enterococcus casseliflavus)
Go to UniProtKB:  O68183
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download SDF File 
Download CCD File 
A, B
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.182 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 76.051α = 90.00
b = 65.802β = 92.43
c = 76.731γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
DNAdata collection
AMoREphasing
MOSFLMdata reduction
REFMACrefinement
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-17
    Type: Initial release
  • Version 1.1: 2019-07-17
    Type: Advisory, Data collection, Refinement description