4N54

Crystal structure of scyllo-inositol dehydrogenase from Lactobacillus casei with bound cofactor NAD(H) and scyllo-inositol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of scyllo-inositol dehydrogenase from Lactobacillus casei with bound cofactor NAD(H) and scyllo-inositol

Bertwistle, D.Aamudalapalli, H.Sanders, D.A.R.Palmer, D.R.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Inositol dehydrogenase
A, B, C, D
352Lactobacillus casei (strain BL23)Mutation(s): 0 
Gene Names: idh
EC: 1.1.1.-
Find proteins for A0A0J9X1Y7 (Lactobacillus casei (strain BL23))
Go to UniProtKB:  A0A0J9X1Y7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2H3
Query on 2H3

Download SDF File 
Download CCD File 
A, B, D
(1r,2r,3r,4r,5r,6r)-cyclohexane-1,2,3,4,5,6-hexol
scyllo-inositol
C6 H12 O6
CDAISMWEOUEBRE-CDRYSYESSA-N
 Ligand Interaction
NAI
Query on NAI

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Download CCD File 
A, B, C, D
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.222 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 85.250α = 90.00
b = 99.830β = 90.00
c = 192.510γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MxDCdata collection
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-04-15
    Type: Initial release