4N53

Human enterovirus 71 uncoating intermediate captured at atomic resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3063 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.228 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Human enterovirus 71 uncoating captured at atomic resolution.

Lyu, K.Ding, J.Han, J.F.Zhang, Y.Wu, X.Y.He, Y.L.Qin, C.F.Chen, R.

(2014) J.Virol. 88: 3114-3126


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP1
A
297Enterovirus A71Mutation(s): 0 
Find proteins for S5QA87 (Enterovirus A71)
Go to UniProtKB:  S5QA87
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP2
B
254Enterovirus A71Mutation(s): 0 
Find proteins for S4VM80 (Enterovirus A71)
Go to UniProtKB:  S4VM80
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP3
C
242Enterovirus A71Mutation(s): 0 
Find proteins for S5ZCI0 (Enterovirus A71)
Go to UniProtKB:  S5ZCI0
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP4
D
69Enterovirus A71Mutation(s): 0 
Find proteins for S6C3M9 (Enterovirus A71)
Go to UniProtKB:  S6C3M9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SPH
Query on SPH

Download SDF File 
Download CCD File 
A
SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3063 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.228 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 591.375α = 90.00
b = 591.375β = 90.00
c = 591.375γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
SCALEPACKdata scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-10-09 
  • Released Date: 2014-02-05 
  • Deposition Author(s): Chen, R., Lyu, K.

Revision History 

  • Version 1.0: 2014-02-05
    Type: Initial release
  • Version 1.1: 2014-03-12
    Type: Database references