Download MendeleyInteraction of Cisplatin with plasmodium falciparum Glutaredoxin 1
Yogavel, M., Tripathi, T., Rahlfs, S., Becker, K., Sharma, A.To be published.
4N11
Crystal structure of plasmodium falciparum reduced glutaredoxin 1 (PfGrx1) complexed with cisplatin
- PDB DOI: https://doi.org/10.2210/pdb4N11/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Plasmodium falciparum 3D7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-10-03 Released: 2014-10-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.208
- R-Value Work: 0.157
- R-Value Observed: 0.162
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutaredoxin | A | 111 | Plasmodium falciparum 3D7 | Mutation(s): 0 Gene Names: GRX1, PF3D7_0306300 EC: 1.20.4.1 (PDB Primary Data), 1.8.4.2 (UniProt) |  |
UniProt | |||||
Find proteins for Q9NLB2 (Plasmodium falciparum (isolate 3D7)) Explore Q9NLB2 Go to UniProtKB: Q9NLB2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NLB2 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CPT Query on CPT | E [auth A] | Cisplatin Cl2 H6 N2 Pt LXZZYRPGZAFOLE-UHFFFAOYSA-L |  | Ligand Interaction | |
| MPO Query on MPO | B [auth A] | 3[N-MORPHOLINO]PROPANE SULFONIC ACID C7 H15 N O4 S DVLFYONBTKHTER-UHFFFAOYSA-N |  | Ligand Interaction | |
| MPD Query on MPD | C [auth A], D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.208
- R-Value Work: 0.157
- R-Value Observed: 0.162
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.478 | α = 90 |
| b = 48.478 | β = 90 |
| c = 82.391 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MAR345dtb | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| AutoSol | phasing |
Entry History
Deposition Data
- Released Date: 2014-10-08 Deposition Author(s): Yogavel, M., Sharma, A.
Revision History (Full details and data files)
- Version 1.0: 2014-10-08
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description
