4MYB | pdb_00004myb

Crystal Structure of Francisella tularensis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD)

PDB DOI: https://doi.org/10.2210/pdb4MYB/pdb

Classification: TRANSFERASE
Organism(s): Francisella tularensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-09-27 Released: 2013-11-06
Deposition Author(s): Noble, S.M., Tsang, A.K., Couch, R.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.266 (Depositor), 0.260 (DCC)
R-Value Work:
0.255 (Depositor), 0.260 (DCC)
R-Value Observed:
0.255 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Francisella tularensis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD)

Noble, S.M., Tsang, A.K., Couch, R.D.

To be published.

Macromolecule Content

Total Structure Weight: 29.46 kDa
Atom Count: 1,791
Modeled Residue Count: 217
Deposited Residue Count: 261
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A	261	Francisella tularensis	Mutation(s): 0 Gene Names: ispD, FTL_1525 EC: 2.7.7.60
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.266 (Depositor), 0.260 (DCC)
R-Value Work: 0.255 (Depositor), 0.260 (DCC)
R-Value Observed: 0.255 (Depositor)

Space Group: F 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 200.409	α = 90
b = 200.409	β = 90
c = 200.409	γ = 90

Software Package:

Software Name	Purpose
SAINT	data scaling
SAINT	data reduction
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-11-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-11-06
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.