4MY8

Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor Q21


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2924 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor Q21

Kim, Y.Makowska-Grzyska, M.Gu, M.Gorla, S.K.Kavitha, M.Cuny, G.Hedstrom, L.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Inosine-5'-monophosphate dehydrogenase
A, B, C, D
384Bacillus anthracisMutation(s): 0 
Gene Names: guaB
EC: 1.1.1.205
Find proteins for A0A0J1HJU0 (Bacillus anthracis)
Go to UniProtKB:  A0A0J1HJU0
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IMP
Query on IMP

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Download CCD File 
A, B, C, D
INOSINIC ACID
C10 H13 N4 O8 P
GRSZFWQUAKGDAV-KQYNXXCUSA-N
 Ligand Interaction
FMT
Query on FMT

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Download CCD File 
A, B, C, D
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
ACY
Query on ACY

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Download CCD File 
A, C
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Q21
Query on Q21

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Download CCD File 
A, B, D
(2S)-2-(naphthalen-1-yloxy)-N-[2-(pyridin-4-yl)-1,3-benzoxazol-5-yl]propanamide
C25 H19 N3 O3
QCNXGTHMVPSAAC-INIZCTEOSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
Q21Ki: 17 - 24 nM (98) BINDINGDB
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 111.433α = 90.00
b = 56.226β = 89.83
c = 111.395γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000data collection
PHENIXrefinement
HKL-3000phasing
HKL-3000data reduction
MOLREPphasing
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-13
    Type: Initial release
  • Version 1.1: 2017-08-02
    Type: Refinement description, Source and taxonomy
  • Version 1.2: 2018-01-24
    Type: Structure summary