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Wang, J., Zajonc, D.M.To be published.
4MX7
Structure of mouse CD1d in complex with dioleoyl-phosphatidic acid
- DOI: 10.2210/pdb4MX7/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Spodoptera frugiperda
- Deposited: 2013-09-25 Released: 2014-10-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.24 Å
- R-Value Free: 0.252
- R-Value Work: 0.215
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Antigen-presenting glycoprotein CD1d1 | A | 285 | Mus musculus | Mutation(s): 0 Gene Names: Cd1d1 (Cd1.1) |
Find proteins for P11609 (Mus musculus) Go to UniProtKB: P11609 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Beta-2-microglobulin | B | 99 | Mus musculus | Mutation(s): 0 Gene Names: B2m |
Find proteins for P01887 (Mus musculus) Go to UniProtKB: P01887 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MX7 Query on MX7 | A | (2R)-3-(phosphonooxy)propane-1,2-diyl (9Z,9'Z)bis-octadec-9-enoate dioleoyl-phosphatidic acid C39 H73 O8 P MHUWZNTUIIFHAS-DSSVUWSHSA-N |  | Ligand Interaction | |
| NAG Query on NAG | A | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.24 Å
- R-Value Free: 0.252
- R-Value Work: 0.215
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 42.200 | α = 90.00 |
| b = 106.300 | β = 90.00 |
| c = 107.480 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| Blu-Ice | data collection |
| MOLREP | phasing |
| SCALA | data scaling |
Entry History
Deposition Data
- Deposited Date: 2013-09-25
- Released Date: 2014-10-01
- Deposition Author(s): Zajonc, D.M., Wang, J.
