4MOZ | pdb_00004moz

Fructose-bisphosphate aldolase from Slackia heliotrinireducens DSM 20476

PDB DOI: https://doi.org/10.2210/pdb4MOZ/pdb

Classification: LYASE
Organism(s): Slackia heliotrinireducens DSM 20476
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-09-12 Released: 2013-09-25
Deposition Author(s): Chang, C., Li, H., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.223 (Depositor), 0.226 (DCC)
R-Value Work:
0.169 (Depositor), 0.173 (DCC)
R-Value Observed:
0.172 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Fructose-bisphosphate aldolase from Slackia heliotrinireducens DSM 20476

Chang, C., Li, H., Jedrzejczak, R., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 173.01 kDa
Atom Count: 13,036
Modeled Residue Count: 1,575
Deposited Residue Count: 1,595
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase	A, B, C, D, E	319	Slackia heliotrinireducens DSM 20476	Mutation(s): 0 Gene Names: Shel_19790 EC: 4.1.2.13
UniProt
Find proteins for C7N7V8 (Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)) Explore C7N7V8 Go to UniProtKB: C7N7V8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C7N7V8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.223 (Depositor), 0.226 (DCC)
R-Value Work: 0.169 (Depositor), 0.173 (DCC)
R-Value Observed: 0.172 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 135.783	α = 90
b = 174.202	β = 90
c = 203.023	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
MLPHARE	phasing
DM	phasing
SHELXDE	phasing
ARP/wARP	model building
RESOLVE	phasing
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-09-25

Deposition Author(s):

Jedrzejczak, R.

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2013-09-25
Type: Initial release
Version 1.1: 2017-11-15
Changes: Refinement description
Version 1.2: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.