4MMW

Crystal structure of D-glucarate dehydratase from Agrobacterium tumefaciens complexed with magnesium, L-Xylarohydroxamate and L-Lyxarohydroxamate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.647 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of D-glucarate dehydratase from Agrobacterium tumefaciens complexed with magnesium, L-Xylarohydroxamate and L-Lyxarohydroxamate

Fedorov, A.A.Fedorov, E.V.Sakai, A.Gerlt, J.A.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Isomerase/lactonizing enzyme
A, B
405Agrobacterium fabrum (strain C58 / ATCC 33970)N/A
Find proteins for Q7CSI0 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  Q7CSI0
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
XYH
Query on XYH

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A, B
XYLAROHYDROXAMATE
C5 H8 N O7
DMGBHBFPSRKPBV-XZIMBLGRSA-M
 Ligand Interaction
MG
Query on MG

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A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

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A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
LLH
Query on LLH

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A, B
(2R,3S,4R)-2,3,4-TRIHYDROXY-5-(HYDROXYAMINO)-5-OXOPENTANOIC ACID
C5 H9 N O7
DMGBHBFPSRKPBV-ZVHKOUPVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.647 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.170 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 118.099α = 90.00
b = 118.099β = 90.00
c = 133.278γ = 90.00
Software Package:
Software NamePurpose
BALBESphasing
HKL-2000data reduction
CBASSdata collection
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-18
    Type: Initial release