4MK3

Crystal structure of a glutathione transferase family member from Cupriavidus metallidurans CH34, target EFI-507362, with bound glutathione sulfinic acid (gso2h)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.501 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of a glutathione transferase family member from Cupriavidus metallidurans CH34, target EFI-507362, with bound glutathione sulfinic acid (gso2h)

Toro, R.Bhosle, R.Vetting, M.W.Al Obaidi, N.F.Morisco, L.L.Wasserman, S.R.Sojitra, S.Stead, M.Washington, E.Scott Glenn, A.Chowdhury, S.Evans, B.Hillerich, B.Love, J.Seidel, R.D.Imker, H.J.Gerlt, J.A.Armstrong, R.N.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glutathione S-transferase
A
226Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)Gene Names: gst-1
EC: 2.5.1.18
Find proteins for Q1LJ46 (Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34))
Go to UniProtKB:  Q1LJ46
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GSF
Query on GSF

Download SDF File 
Download CCD File 
A
L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANYLGLYCINE
GLUTATHIONE SULFINATE
C10 H17 N3 O8 S
DMAPAHUEYHXRFI-WDSKDSINSA-N
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.501 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.156 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 70.611α = 90.00
b = 70.611β = 90.00
c = 89.553γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-3000data reduction
AMoREphasing
PHENIXrefinement
MAR345data collection
SCALEPACKdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2013-09-18
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description