4MJE

Synechocystis sp. PCC 6803 glutaredoxin A-R27L


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Utility of Synechocystis sp. PCC 6803 glutaredoxin A as a platform to study high-resolution mutagenesis of proteins.

Knaff, D.B.Sutton, R.B.

(2013) Front Plant Sci 4: 461-461

  • DOI: https://doi.org/10.3389/fpls.2013.00461
  • Primary Citation of Related Structures:  
    4MJA, 4MJB, 4MJC, 4MJE

  • PubMed Abstract: 

    Glutaredoxin from the cyanobacterium Synechocystis sp. PCC 6803 is a small protein, containing only 88 amino acids, that participates in a large number of redox reactions, serving both as an electron donor for enzyme-catalyzed reductions and as a regulator of diverse metabolic pathways. The crystal structures of glutaredoxins from several species have been solved, including the glutaredoxin A isoform from the cyanobacterium Synechocystis sp. PCC 6803. We have utilized the small size of Synechocystis glutaredoxin A and its propensity to form protein crystals that diffract to high resolution to explore a long-standing question in biochemistry; i.e., what are the effects of mutations on protein structure and function? Taking advantage of these properties, we have initiated a long-term educational project that would examine the structural and biochemical changes in glutaredoxin as a function of single-point mutational replacements. Here, we report some of the mutational effects that we have observed to date.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, Texas Tech University Lubbock, TX, USA ; Center for Biotechnology and Genomics, Texas Tech University Lubbock, TX, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable glutaredoxin ssr206199Synechocystis sp. PCC 6803 substr. KazusaMutation(s): 1 
Gene Names: ssr2061
UniProt
Find proteins for P73492 (Synechocystis sp. (strain PCC 6803 / Kazusa))
Explore P73492 
Go to UniProtKB:  P73492
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP73492
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.29α = 90
b = 39.1β = 90
c = 50.63γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-04
    Type: Initial release
  • Version 1.1: 2014-02-05
    Changes: Database references
  • Version 1.2: 2014-04-30
    Changes: Other
  • Version 1.3: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description