4MJ5

Crystal Structure of HLA-A*1101 in complex with H1-22, an influenza A(H1N1) virus epitope


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.401 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Cross-Immunities against Avian Influenza H7N9 Virus in the Healthy Population Affected by Antigenicity-Dependent Substitutions.

Liu, W.J.Tan, S.Zhao, M.Quan, C.Bi, Y.Wu, Y.Zhang, S.Zhang, H.Xiao, H.Qi, J.Yan, J.Liu, W.Yu, H.Shu, Y.Wu, G.Gao, G.F.

(2016) J.INFECT.DIS. --: --

  • DOI: 10.1093/infdis/jiw471
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  •  The emergence of infections by the novel avian influenza A(H7N9) virus has posed a threat to human health. Cross-immunity between A(H7N9) and other heterosubtypic influenza viruses affected by antigenicity-dependent substitutions needs to be investi ...

     The emergence of infections by the novel avian influenza A(H7N9) virus has posed a threat to human health. Cross-immunity between A(H7N9) and other heterosubtypic influenza viruses affected by antigenicity-dependent substitutions needs to be investigated.


    Organizational Affiliation

    Key Laboratory of Medical Virology, Ministry of Health, National Institute for Viral Disease Control and Prevention.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, A-11 alpha chain
A
274Homo sapiensMutation(s): 0 
Gene Names: HLA-A (HLAA)
Find proteins for P13746 (Homo sapiens)
Go to Gene View: HLA-A
Go to UniProtKB:  P13746
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Nucleocapsid protein
C
11Influenza A virus (strain A/Wisconsin/3523/1988 H1N1)Mutation(s): 0 
Gene Names: NP
Find proteins for P68043 (Influenza A virus (strain A/Wisconsin/3523/1988 H1N1))
Go to UniProtKB:  P68043
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.401 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 60.382α = 90.00
b = 66.374β = 90.00
c = 114.589γ = 90.00
Software Package:
Software NamePurpose
PHASESphasing
HKL-2000data scaling
HKL-2000data collection
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-08
    Type: Initial release
  • Version 1.1: 2016-12-07
    Type: Database references, Structure summary