4MIN

Crystal Structure of myo-inositol dehydrogenase from Lactobacillus casei with bound cofactor NAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of myo-inositol dehydrogenase from Lactobacillus casei with bound cofactor NAD

Bertwistle, D.Aamudalapalli, H.Sanders, D.A.R.Palmer, D.R.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase
A, B, C, D
351Lactobacillus casei (strain BL23)Mutation(s): 0 
Gene Names: idh (iolG)
EC: 1.1.1.18, 1.1.1.369
Find proteins for A0A0J9X1Y2 (Lactobacillus casei (strain BL23))
Go to UniProtKB:  A0A0J9X1Y2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A, B, C, D
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.184 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 106.560α = 90.00
b = 110.510β = 90.00
c = 127.116γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata reduction
MxDCdata collection
PHENIXrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-03-04
    Type: Initial release