4MG2

ALKBH2 F102A cross-linked to undamaged dsDNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin

Chen, B.Gan, J.Yang, C.G.

(2014) Sci China Chem 57: 307-313


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
A
205Homo sapiensMutation(s): 1 
Gene Names: ALKBH2 (ABH2)
EC: 1.14.11.33
Find proteins for Q6NS38 (Homo sapiens)
Go to Gene View: ALKBH2
Go to UniProtKB:  Q6NS38
Entity ID: 2
MoleculeChainsLengthOrganism
DNA-1B15N/A
Entity ID: 3
MoleculeChainsLengthOrganism
DNA-2C15N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
2YR
Query on 2YR
C
NON-POLYMERC11 H18 N3 O7 P S

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 129.997α = 90.00
b = 129.997β = 90.00
c = 84.825γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
AMoREphasing
HKL-2000data scaling
REFMACrefinement
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-02-26
    Type: Initial release
  • Version 1.1: 2014-06-18
    Type: Non-polymer description