Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 63.62 kDa 
• Atom Count: 4141 
• Residue Count: 492 
• Unique protein chains: 2

4MDD

Crystal Structure of the Glucocorticoid Receptor Bound to a Non-steroidal Antagonist Reveals Repositioning and Partial Disordering of Activation Function Helix 12

• DOI: 10.2210/pdb4MDD/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2013-08-22 Released: 2014-12-03 
• Deposition Author(s): Coghlan, M.J., Luz, J.G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.258 
• R-Value Work: 0.221 
• R-Value Observed: 0.222 

Literature

Crystal Structure of the Glucocorticoid Receptor Bound to a Non-steroidal Antagonist Reveals Repositioning and Partial Disordering of Activation Function Helix 12

Luz, J.G., Coghlan, M.J.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucocorticoid receptor	A, B	258	Homo sapiens	Mutation(s): 9  Gene Names: NR3C1, GRL
Find proteins for P04150 (Homo sapiens) Explore P04150  Go to UniProtKB:  P04150
NIH Common Fund Data Resources
PHAROS:  P04150 GTEx:  ENSG00000113580

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear receptor corepressor 1	C, D	15	Homo sapiens	Mutation(s): 0  Gene Names: NCOR1, KIAA1047
Find proteins for O75376 (Homo sapiens) Explore O75376  Go to UniProtKB:  O75376
NIH Common Fund Data Resources
PHAROS:  O75376 GTEx:  ENSG00000141027

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
29M	A, B	N-[2-{[benzyl(methyl)amino]methyl}-3-(4-fluoro-2-methoxyphenyl)-5-(propan-2-yl)-1H-indol-7-yl]methanesulfonamide C28 H32 F N3 O3 S MFAGIEMFDDDLMT-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
29M	IC50:  11   nM  BindingDB
29M	IC50:  2.799999952316284   nM  BindingDB
29M	Ki:  1.2000000476837158   nM  BindingDB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.258 
• R-Value Work: 0.221 
• R-Value Observed: 0.222 
• Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.543	α = 90
b = 72.543	β = 90
c = 229.472	γ = 120

Software Package:

Software Name	Purpose
AMoRE	phasing
BUSTER	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2013-08-22 
• Released Date: 2014-12-03 
Deposition Author(s): Coghlan, M.J., Luz, J.G.

Revision History 

• Version 1.0: 2014-12-03
  Type: Initial release