4M9P

Crystal structure of the human filamin A Ig-like domains 3-5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A Novel Structural Unit in the N-terminal Region of Filamins.

Sethi, R.Seppala, J.Tossavainen, H.Ylilauri, M.Ruskamo, S.Pentikainen, O.T.Pentikainen, U.Permi, P.Ylanne, J.

(2014) J.Biol.Chem. 289: 8588-8598

  • DOI: 10.1074/jbc.M113.537456
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Immunoglobulin-like (Ig) domains are a widely expanded superfamily that act as interaction motifs or as structural spacers in multidomain proteins. Vertebrate filamins (FLNs), which are multifunctional actin-binding proteins, consist of 24 Ig domains ...

    Immunoglobulin-like (Ig) domains are a widely expanded superfamily that act as interaction motifs or as structural spacers in multidomain proteins. Vertebrate filamins (FLNs), which are multifunctional actin-binding proteins, consist of 24 Ig domains. We have recently discovered that in the C-terminal rod 2 region of FLN, Ig domains interact with each other forming functional domain pairs, where the interaction with signaling and transmembrane proteins is mechanically regulated by weak actomyosin contraction forces. Here, we investigated if there are similar inter-domain interactions around domain 4 in the N-terminal rod 1 region of FLN. Protein crystal structures revealed a new type of domain organization between domains 3, 4, and 5. In this module, domains 4 and 5 interact rather tightly, whereas domain 3 has a partially flexible interface with domain 4. NMR peptide titration experiments showed that within the three-domain module, domain 4 is capable for interaction with a peptide derived from platelet glycoprotein Ib. Crystal structures of FLN domains 4 and 5 in complex with the peptide revealed a typical β sheet augmentation interaction observed for many FLN ligands. Domain 5 was found to stabilize domain 4, and this could provide a mechanism for the regulation of domain 4 interactions.


    Organizational Affiliation

    From the Department of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, P. O. Box 35, Survontie 9, 40014 Jyväskylä.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Filamin-A
A
291Homo sapiensMutation(s): 0 
Gene Names: FLNA (FLN, FLN1)
Find proteins for P21333 (Homo sapiens)
Go to Gene View: FLNA
Go to UniProtKB:  P21333
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.199 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 63.041α = 90.00
b = 63.041β = 90.00
c = 136.604γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
EDNAdata collection
XDSdata reduction
PHASERphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-02-05
    Type: Initial release
  • Version 1.1: 2014-02-12
    Type: Database references
  • Version 1.2: 2014-04-09
    Type: Database references