Download MendeleyCrystal structure of the complex between human tissue factor extracellular domain and antibody 10H10 FAB fragment
Teplyakov, A., Obmolova, G., Malia, T., Gilliland, G.L.To be published.
4M7L
Crystal structure of the complex between human tissue factor extracellular domain and antibody 10H10 FAB fragment
- PDB DOI: https://doi.org/10.2210/pdb4M7L/pdb
- Classification: BLOOD CLOTTING/IMMUNE SYSTEM
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Escherichia coli, Homo sapiens
- Mutation(s): No
- Deposited: 2013-08-12 Released: 2014-08-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.40 Å
- R-Value Free: 0.289
- R-Value Work: 0.242
- R-Value Observed: 0.245
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tissue factor | A [auth T] | 215 | Homo sapiens | Mutation(s): 0 Gene Names: F3 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P13726 (Homo sapiens) Explore P13726 Go to UniProtKB: P13726 | |||||
PHAROS: P13726 GTEx: ENSG00000117525 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13726 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 10H10 light chain | B [auth L] | 220 | Mus musculus, Homo sapiens This entity is chimeric | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 10H10 heavy chain | C [auth H] | 229 | Mus musculus, Homo sapiens This entity is chimeric | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PCA Query on PCA | C [auth H] | L-PEPTIDE LINKING | C5 H7 N O3 |  | GLN |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.40 Å
- R-Value Free: 0.289
- R-Value Work: 0.242
- R-Value Observed: 0.245
- Space Group: I 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.86 | α = 90 |
| b = 116.86 | β = 90 |
| c = 106.86 | γ = 90 |
| Software Name | Purpose |
|---|---|
| StructureStudio | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
Entry History
Deposition Data
- Released Date: 2014-08-13 Deposition Author(s): Teplyakov, A., Obmolova, G., Malia, T., Gilliland, G.L.
Revision History (Full details and data files)
- Version 1.0: 2014-08-13
Type: Initial release - Version 2.0: 2019-12-25
Changes: Database references, Derived calculations, Polymer sequence - Version 2.1: 2023-09-20
Changes: Data collection, Database references, Refinement description
