4M3C

Structure of a binary complex between homologous tetrameric legume lectins from Butea monosperma and Spatholobus parviflorus seeds


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of a binary complex between homologous tetrameric legume lectins from Butea monosperma and Spatholobus parviflorus seeds

Surya, S.Abhilash, J.Geethanandan, K.Sadasivan, C.Haridas, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lectin Alpha chain
A, C
255Butea monospermaN/A
Find proteins for H2L2M6 (Butea monosperma)
Go to UniProtKB:  H2L2M6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Lectin Beta Chain
B, D
239Butea monospermaN/A
Find proteins for H2L2M7 (Butea monosperma)
Go to UniProtKB:  H2L2M7
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Seed lectin alpha chain
E, G
251Spatholobus parviflorusN/A
Find proteins for P86352 (Spatholobus parviflorus)
Go to UniProtKB:  P86352
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Seed lectin beta chain
F, H
239Spatholobus parviflorusN/A
Find proteins for P86353 (Spatholobus parviflorus)
Go to UniProtKB:  P86353
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
C, D, F
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
ABU
Query on ABU

Download SDF File 
Download CCD File 
A, B, C, D, E, H
GAMMA-AMINO-BUTANOIC ACID
GAMMA(AMINO)-BUTYRIC ACID
C4 H9 N O2
BTCSSZJGUNDROE-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
A, C, E, G
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.211 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 77.110α = 96.00
b = 78.630β = 89.99
c = 96.190γ = 100.37
Software Package:
Software NamePurpose
Automodel building
MAR345dtbdata collection
SCALAdata scaling
Autophasing
REFMACrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-18
    Type: Initial release