4M0I | pdb_00004m0i

CRYSTAL STRUCTURE OF SYNTHETIC HIV-1 CAPSID C-TERMINAL DOMAIN (CTD) C198S mutant

PDB DOI: https://doi.org/10.2210/pdb4M0I/pdb

Classification: VIRAL PROTEIN
Organism(s): Human immunodeficiency virus 1
Mutation(s): Yes

Deposited: 2013-08-01 Released: 2014-12-17
Deposition Author(s): Howell, K., Tolbert, W.D., Pazgier, M., Lu, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.294 (Depositor), 0.301 (DCC)
R-Value Work:
0.236 (Depositor), 0.234 (DCC)
R-Value Observed:
0.239 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Molecular basis of disulfide bonding-regulated HIV-1 capsid assembly

Howell, K., Li, C., Tolbert, W.D., Beckett, D., Pazgier, M., Lu, W.

To be published.

Macromolecule Content

Total Structure Weight: 9.51 kDa
Atom Count: 567
Modeled Residue Count: 71
Deposited Residue Count: 86
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HIV-1 CAPSID PROTEIN	A	86	Human immunodeficiency virus 1	Mutation(s): 1
UniProt
Find proteins for Q71B91 (Human immunodeficiency virus type 1) Explore Q71B91 Go to UniProtKB: Q71B91
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q71B91
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.294 (Depositor), 0.301 (DCC)
R-Value Work: 0.236 (Depositor), 0.234 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: I 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.001	α = 90
b = 59.001	β = 90
c = 61.176	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-12-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-12-17
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.