4LUN

Structure of the N-terminal mIF4G domain from S. cerevisiae Upf2, a protein involved in the degradation of mRNAs containing premature stop codons


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.641 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of an mRNA decay factor

Fourati, Z.Roy, B.Millan, C.Courreux, P.D.Kervestin, S.van Tilbeurgh, H.He, F.Uson, I.Jacobson, A.Graille, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nonsense-mediated mRNA decay protein 2
U
316Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NMD2 (IFS1, SUA1, UPF2)
Find proteins for P38798 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38798
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
U
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.641 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.191 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 41.813α = 90.00
b = 50.927β = 99.96
c = 71.993γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Arcimboldophasing
XSCALEdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-30
    Type: Initial release
  • Version 1.1: 2017-12-27
    Type: Structure summary