4LQL | pdb_00004lql

Crystal structure of L-arabinose isomerase from Lactobacillus fermentum CGMCC2921

PDB DOI: https://doi.org/10.2210/pdb4LQL/pdb

Classification: ISOMERASE
Organism(s): Limosilactobacillus fermentum
Mutation(s): No

Deposited: 2013-07-19 Released: 2014-07-23
Deposition Author(s): Xu, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.23 Å
R-Value Free:
0.432 (Depositor), 0.431 (DCC)
R-Value Work:
0.314 (Depositor), 0.316 (DCC)
R-Value Observed:
0.320 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 4LQL

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of L-arabinose isomerase from Lactobacillus fermentum CGMCC2921

Xu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 320.95 kDa
Atom Count: 18,516
Modeled Residue Count: 2,844
Deposited Residue Count: 2,844
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-arabinose isomerase	A, B, C, D, E A, B, C, D, E, F	474	Limosilactobacillus fermentum	Mutation(s): 0 EC: 5.3.1.4
UniProt
Find proteins for D9ILD9 (Limosilactobacillus fermentum) Explore D9ILD9 Go to UniProtKB: D9ILD9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D9ILD9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.23 Å
R-Value Free: 0.432 (Depositor), 0.431 (DCC)
R-Value Work: 0.314 (Depositor), 0.316 (DCC)
R-Value Observed: 0.320 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.201	α = 90
b = 184.831	β = 90
c = 186.347	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASES	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.