4LQL | pdb_00004lql

Crystal structure of L-arabinose isomerase from Lactobacillus fermentum CGMCC2921

PDB DOI: https://doi.org/10.2210/pdb4LQL/pdb

Classification: ISOMERASE
Organism(s): Limosilactobacillus fermentum
Mutation(s): No

Deposited: 2013-07-19 Released: 2014-07-23
Deposition Author(s): Xu, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.23 Å
R-Value Free:
0.432 (Depositor), 0.430 (DCC)
R-Value Work:
0.314 (Depositor), 0.320 (DCC)
R-Value Observed:
0.320 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of L-arabinose isomerase from Lactobacillus fermentum CGMCC2921

Xu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 320.95 kDa
Atom Count: 18,516
Modeled Residue Count: 2,844
Deposited Residue Count: 2,844
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-arabinose isomerase	A, B, C, D, E A, B, C, D, E, F	474	Limosilactobacillus fermentum	Mutation(s): 0 EC: 5.3.1.4
UniProt
Find proteins for D9ILD9 (Limosilactobacillus fermentum) Explore D9ILD9 Go to UniProtKB: D9ILD9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D9ILD9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.23 Å
R-Value Free: 0.432 (Depositor), 0.430 (DCC)
R-Value Work: 0.314 (Depositor), 0.320 (DCC)
R-Value Observed: 0.320 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.201	α = 90
b = 184.831	β = 90
c = 186.347	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASES	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.