4LMP

Mycobacterium tuberculosis L-alanine dehydrogenase x-ray structure in complex with N6-methyl adenosine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Drug target analysis by dye-ligand affinity chromatography

Kim, H.-B.Hung, L.-W.Goulding, C.W.Terwilliger, T.C.Kim, C.-Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alanine dehydrogenase
A
371Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)EC: 1.4.1.1
Find proteins for I6YEC9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Go to UniProtKB:  I6YEC9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
6MD
Query on 6MD

Download SDF File 
Download CCD File 
A
N-methyladenosine
C11 H15 N5 O4
VQAYFKKCNSOZKM-IOSLPCCCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.183 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 89.730α = 90.00
b = 89.730β = 90.00
c = 290.401γ = 120.00
Software Package:
Software NamePurpose
ADSCdata collection
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
SOLVEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-06
    Type: Initial release