4LKR

Crystal structure of deoD-3 gene product from Shewanella oneidensis MR-1, NYSGRC target 029437


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of deoD-3 gene product from Shewanella oneidensis MR-1, NYSGRC target 029437

Malashkevich, V.N.Bonanno, J.B.Bhosle, R.Toro, R.Hillerich, B.Gizzi, A.Garforth, S.Kar, A.Chan, M.K.Lafluer, J.Patel, H.Matikainen, B.Chamala, S.Lim, S.Celikgil, A.Villegas, G.Evans, B.Love, J.Fiser, A.Khafizov, K.Seidel, R.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Purine nucleoside phosphorylase DeoD-type
A
256Shewanella oneidensis (strain MR-1)Mutation(s): 0 
Gene Names: deoD3
EC: 2.4.2.1
Find proteins for Q8EDM4 (Shewanella oneidensis (strain MR-1))
Go to UniProtKB:  Q8EDM4
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.164 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 153.641α = 90.00
b = 153.641β = 90.00
c = 52.704γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
PDB_EXTRACTdata extraction
CBASSdata collection
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2013-07-24
    Type: Initial release