4LG9 | pdb_00004lg9

Crystal structure of TBL1XR1 WD40 repeats

• PDB DOI: https://doi.org/10.2210/pdb4LG9/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2013-06-27 Released: 2014-04-16 
• Deposition Author(s): Xu, C., Tempel, W., He, H., Wu, X., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 
  0.208 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.163 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.166 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of TBL1XR1 WD40 repeats

Xu, C., Tempel, W., He, H., Wu, X., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 43.65 kDa 
• Atom Count: 2,917 
• Modeled Residue Count: 351 
• Deposited Residue Count: 400 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box-like/WD repeat-containing protein TBL1XR1	A	400	Homo sapiens	Mutation(s): 1  Gene Names: TBL1XR1, IRA1, TBLR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZK7 (Homo sapiens) Explore Q9BZK7  Go to UniProtKB:  Q9BZK7
PHAROS:  Q9BZK7 GTEx:  ENSG00000177565

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A], N [auth A], O [auth A], P [auth A], Q [auth A], R [auth A], S [auth A], T [auth A], U [auth A], V [auth A], W [auth A], X [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free:  0.208 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.163 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.166 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.776	α = 90
b = 90.776	β = 90
c = 104.853	γ = 120

Software Package:

Software Name	Purpose
SCALA	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-04-16 
Deposition Author(s): Xu, C., Tempel, W., He, H., Wu, X., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2014-04-16
  Type: Initial release
  
• Version 1.1: 2017-05-10
  Changes: Structure summary
• Version 1.2: 2023-09-20
  Changes: Data collection, Database references, Refinement description