4LDG | pdb_00004ldg

Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370

PDB DOI: https://doi.org/10.2210/pdb4LDG/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Cryptosporidium parvum Iowa II
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-06-24 Released: 2013-07-24
Deposition Author(s): Wernimont, A.K., Tempel, W., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., El Bakkouri, M., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free:
0.227 (Depositor), 0.230 (DCC)
R-Value Work:
0.194 (Depositor), 0.198 (DCC)
R-Value Observed:
0.195 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370

Wernimont, A.K., Tempel, W., Loppnau, P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., El Bakkouri, M.

To be published.

Macromolecule Content

Total Structure Weight: 32.79 kDa
Atom Count: 1,864
Modeled Residue Count: 216
Deposited Residue Count: 278
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein with a SET domain within carboxy region	A	278	Cryptosporidium parvum Iowa II	Mutation(s): 0 Gene Names: cgd4_370
UniProt
Find proteins for Q5CQK4 (Cryptosporidium parvum (strain Iowa II)) Explore Q5CQK4 Go to UniProtKB: Q5CQK4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5CQK4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MLI Query on MLI Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MALONATE ION C₃ H₂ O₄ OFOBLEOULBTSOW-UHFFFAOYSA-L		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free: 0.227 (Depositor), 0.230 (DCC)
R-Value Work: 0.194 (Depositor), 0.198 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.229	α = 90
b = 68.229	β = 90
c = 142.694	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data collection
BALBES	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-07-24

Deposition Author(s):

Wernimont, A.K.

Arrowsmith, C.H.

El Bakkouri, M.

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2013-07-24
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.