4LCY

Crystal structure of HLA-b46 at 1.6 angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure Analysis of the Human Leukocyte Antigen B*46:01

Liu, J.X.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, B-46 alpha chain
A, F
274Homo sapiensMutation(s): 0 
Gene Names: HLA-B (HLAB)
Find proteins for P30484 (Homo sapiens)
Go to Gene View: HLA-B
Go to UniProtKB:  P30484
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, H
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
dengue1 poly peptide
C, J
9Dengue virus type 1 (strain Nauru/West Pac/1974)Mutation(s): 0 
Find proteins for P17763 (Dengue virus type 1 (strain Nauru/West Pac/1974))
Go to UniProtKB:  P17763
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B, F, H
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.172 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 49.950α = 90.00
b = 89.730β = 98.45
c = 94.620γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
HKL-2000data collection
REFMACrefinement
SCALAdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-06-24 
  • Released Date: 2014-06-25 
  • Deposition Author(s): Liu, J.X.

Revision History 

  • Version 1.0: 2014-06-25
    Type: Initial release