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Download EndnoteCrystal Structure Analysis of the Human Leukocyte Antigen B*46:01
Liu, J.X.To be published.
4LCY
Crystal structure of HLA-b46 at 1.6 angstrom resolution
- DOI: 10.2210/pdb4LCY/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens, Dengue virus type 1 (strain Nauru/West Pac/1974)
- Expression System: Escherichia coli
- Deposited: 2013-06-24 Released: 2014-06-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.201
- R-Value Work: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| HLA class I histocompatibility antigen, B-46 alpha chain | A, F | 274 | Homo sapiens | Mutation(s): 0 Gene Names: HLA-B (HLAB) |
Find proteins for P01889 (Homo sapiens) Go to Gene View: HLA-B Go to UniProtKB: P01889 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Beta-2-microglobulin | B, H | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M |
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB: P61769 | ||||
Entity ID: 3 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| dengue1 poly peptide | C, J | 9 | Dengue virus type 1 (strain Nauru/West Pac/1974) | Mutation(s): 0 |
Find proteins for P17763 (Dengue virus type 1 (strain Nauru/West Pac/1974)) Go to UniProtKB: P17763 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | A, B, F, H | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.201
- R-Value Work: 0.172
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 49.950 | α = 90.00 |
| b = 89.730 | β = 98.45 |
| c = 94.620 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| HKL-2000 | data collection |
| REFMAC | refinement |
| SCALA | data scaling |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2013-06-24
- Released Date: 2014-06-25
- Deposition Author(s): Liu, J.X.
