Download MendeleyCrystal Structure Analysis of the Human Leukocyte Antigen B*46:01
Liu, J.X.To be published.
4LCY
Crystal structure of HLA-b46 at 1.6 angstrom resolution
- DOI: 10.2210/pdb4LCY/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens, Dengue virus 1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-06-24 Released: 2014-06-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.201
- R-Value Work: 0.172
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HLA class I histocompatibility antigen, B-46 alpha chain | A, F | 274 | Homo sapiens | Mutation(s): 0 Gene Names: HLA, HLA-B, HLAB |  |
Find proteins for P01889 (Homo sapiens) Explore P01889 Go to UniProtKB: P01889 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | B, H | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, BETA 2 MICROGLOBULIN, CDABP0092, HDCMA22P |  |
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
| |||||
- Find similar proteins by: Sequence | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| dengue1 poly peptide | C, J | 9 | Dengue virus 1 | Mutation(s): 0 EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt), 2.1.1.56 (UniProt), 2.1.1.57 (UniProt), 2.7.7.48 (UniProt) |  |
Find proteins for P17763 (Dengue virus type 1 (strain Nauru/West Pac/1974)) Explore P17763 Go to UniProtKB: P17763 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | A, B, F, H | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.201
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.95 | α = 90 |
| b = 89.73 | β = 98.45 |
| c = 94.62 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Deposited Date: 2013-06-24
- Released Date: 2014-06-25 Deposition Author(s): Liu, J.X.
