4L99

Structure of the RBP from lactococcal phage 1358 in complex with glycerol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Virulent Siphophage CyoEM Structure and Host Recognition and Infection Mechanism

Farenc, C.Spinelli, S.Bebeacua, C.Tremblay, D.Orlov, I.Blangy, S.Klaholz, B.P.Moineau, S.Cambillau, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Receptor Binding Protein
A, B
393Lactococcus phage 1358Mutation(s): 0 
Find proteins for D3W0F1 (Lactococcus phage 1358)
Go to UniProtKB:  D3W0F1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.188 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 166.210α = 90.00
b = 166.210β = 90.00
c = 166.210γ = 90.00
Software Package:
Software NamePurpose
PROTEUM PLUSdata collection
BUSTERrefinement
XSCALEdata scaling
XDSdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-30
    Type: Initial release