Crystal structure of a PDZ domain protein (BDI_1242) from Parabacteroides distasonis ATCC 8503 at 2.50 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
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Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
PDZ domain protein | A | 457 | Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) | Mutation(s): 0  |
Find proteins for A6LBD9 (Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)) Go to UniProtKB:  A6LBD9 |
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
MPD Query on MPD | A | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | ![]() |  Ligand Interaction | |
EOH Query on EOH | A | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 104.093 | α = 90.00 |
b = 104.093 | β = 90.00 |
c = 96.277 | γ = 120.00 |
Software Name | Purpose |
---|---|
BUSTER-TNT | refinement |
BUSTER | refinement |
XSCALE | data scaling |
XDS | data reduction |
SHELX | phasing |
MolProbity | model building |
PDB_EXTRACT | data extraction |
SHARP | phasing |
SHELXD | phasing |