4L5F

Crystal Structure of DENV1-E106 Fab bound to DENV-1 Envelope protein DIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of DENV1-E106 Fab bound to DENV-1 Envelope protein DIII

Edeling, M.A.Austin, S.K.Shrestha, B.Dowd, K.A.Mukherjee, S.Nelson, C.A.Johnson, S.Mabila, M.N.Christian, E.A.Rucker, J.Pierson, T.C.Diamond, M.S.Fremont, D.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of E106 antibody (VH and CH1 of IgG2c)
H
218N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Envelope protein
E
111Dengue virus 1Mutation(s): 0 
Gene Names: E
Find proteins for Q8BE40 (Dengue virus 1)
Go to UniProtKB:  Q8BE40
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Light chain of E106 antibody (kappa)
L
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.190 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 82.661α = 90.00
b = 91.823β = 90.00
c = 92.599γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
DENZOdata reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-11
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description