4L4I | pdb_00004l4i

Crystal structure of mouse Ryanodine Receptor isoform 2 (RyR2) 1-547 disease mutant R420Q

PDB DOI: https://doi.org/10.2210/pdb4L4I/pdb

Classification: METAL TRANSPORT
Organism(s): Mus musculus
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2013-06-07 Released: 2013-07-24
Deposition Author(s): Kimlicka, L., Van Petegem, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.263 (Depositor), 0.278 (DCC)
R-Value Work:
0.228 (Depositor), 0.242 (DCC)
R-Value Observed:
0.230 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of ryanodine receptor disease mutant

Kimlicka, L., Tung, C.C., Carlsson, A.C., Lobo, P.A., Van Petegem, F.

To be published.

Macromolecule Content

Total Structure Weight: 61.64 kDa
Atom Count: 3,623
Modeled Residue Count: 473
Deposited Residue Count: 547
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ryanodine receptor 2	A	547	Mus musculus	Mutation(s): 1 Gene Names: Ryr2
UniProt & NIH Common Fund Data Resources
Find proteins for E9Q401 (Mus musculus) Explore E9Q401 Go to UniProtKB: E9Q401
IMPC: MGI:99685
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E9Q401
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.263 (Depositor), 0.278 (DCC)
R-Value Work: 0.228 (Depositor), 0.242 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.05	α = 90
b = 78.05	β = 90
c = 248.1	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-07-24

Deposition Author(s):

Van Petegem, F.

Revision History (Full details and data files)

Version 1.0: 2013-07-24
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.