4L1R

Glycoprotein B from Herpes Simplex Virus type 1, A549T Rate-of-Entry mutant, low-pH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0255 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Envelope glycoprotein B
A, B
703Human herpesvirus 1 (strain KOS)Mutation(s): 1 
Gene Names: gB
Find proteins for P06437 (Human herpesvirus 1 (strain KOS))
Go to UniProtKB:  P06437
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0255 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.201 
  • Space Group: P 3
Unit Cell:
Length (Å)Angle (°)
a = 117.432α = 90.00
b = 117.432β = 90.00
c = 160.420γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
SCALEPACKdata scaling
HKL-2000data scaling
HKL-3000data collection
PDB_EXTRACTdata extraction
DENZOdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-06-26
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description