4L05

Cu/Zn superoxide dismutase from Brucella abortus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.098 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.113 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus.

Pratt, A.J.DiDonato, M.Shin, D.S.Cabelli, D.E.Bruns, C.K.Belzer, C.A.Gorringe, A.R.Langford, P.R.Tabatabai, L.B.Kroll, J.S.Tainer, J.A.Getzoff, E.D.

(2015) J.Bacteriol. 197: 3834-3847


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Superoxide dismutase [Cu-Zn]
A
154Brucella abortus biovar 1 (strain 9-941)Mutation(s): 0 
Gene Names: sodC
EC: 1.15.1.1
Find proteins for P15453 (Brucella abortus biovar 1 (strain 9-941))
Go to UniProtKB:  P15453
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CU1
Query on CU1

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Download CCD File 
A
COPPER (I) ION
Cu
VMQMZMRVKUZKQL-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CU
Query on CU

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Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.098 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.113 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 49.910α = 90.00
b = 70.528β = 90.00
c = 80.359γ = 90.00
Software Package:
Software NamePurpose
XFITdata reduction
DENZOdata reduction
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-23
    Type: Initial release
  • Version 1.1: 2015-10-28
    Type: Database references
  • Version 1.2: 2015-12-02
    Type: Database references