4KZP

Crystal Structure of a Putative Short Chain Dehydrogenase from Mycobacterium smegmatis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of a Putative Short Chain Dehydrogenase from Mycobacterium smegmatis

Dranow, D.M.Fairman, J.W.Edwards, T.E.Lorimer, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Oxidoreductase, short chain dehydrogenase/reductase family proteinA, B, C, D320Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_5903MSMEI_5743
EC: 1.1.1.100
UniProt
Find proteins for A0R4P1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R4P1 
Go to UniProtKB:  A0R4P1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
K [auth A], Q [auth C], R [auth C], U [auth D]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
E [auth A] , F [auth A] , G [auth A] , H [auth A] , I [auth A] , J [auth A] , L [auth B] , M [auth C] , 
E [auth A],  F [auth A],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  L [auth B],  M [auth C],  N [auth C],  O [auth C],  P [auth C],  S [auth D],  T [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.7α = 90
b = 86.07β = 103.4
c = 92.33γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-24
    Type: Initial release
  • Version 1.1: 2019-07-17
    Changes: Data collection, Refinement description