4KYY | pdb_00004kyy

Crystal Structure of RNA 17-mer UUCGGUUUUGAUCCGGA duplex

  • Classification: RNA
  • Mutation(s): No 

  • Deposited: 2013-05-29 Released: 2013-06-12 
  • Deposition Author(s): Smith, P.C., Shuman, S.

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 
    0.239 (Depositor), 0.239 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 
    0.199 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history. 

Literature

Crystal Structure of RNA 17-mer UUCGGUUUUGAUCCGGA duplex

Smith, P.C., Shuman, S.

To be published.

Macromolecule Content 

  • Total Structure Weight: 11.07 kDa 
  • Atom Count: 804 
  • Modeled Residue Count: 34 
  • Deposited Residue Count: 34 
  • Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by:  Sequence
Entity ID: 1
MoleculeChains LengthOrganismImage
RNA 17-mer
A, B
17N/A
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free:  0.239 (Depositor), 0.239 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 0.199 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.01α = 90
b = 44.01β = 90
c = 91.67γ = 120
Software Package:
Software NamePurpose
CBASSdata collection
PHENIXmodel building
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-06-12
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Data collection, Database references, Derived calculations
  • Version 1.2: 2024-04-03
    Changes: Refinement description