4KT7

The crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548

Borek, D.Tan, K.Stols, L.Eschenfeidt, W.H.Otwinoski, Z.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
A, B
237Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1)Mutation(s): 0 
EC: 2.7.7.60
Find proteins for C7RFG6 (Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1))
Go to UniProtKB:  C7RFG6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.181 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 87.858α = 90.00
b = 145.509β = 90.00
c = 36.719γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
MLPHAREphasing
DMmodel building
WARPmodel building
HKL-3000data reduction
HKL-3000phasing
DMphasing
SBC-Collectdata collection
ARPmodel building
REFMACrefinement
PHENIXrefinement
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-06-05
    Type: Initial release