4KQ9

Crystal structure of periplasmic ribose ABC transporter from Conexibacter woesei DSM 14684


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of periplasmic ribose ABC transporter from Conexibacter woesei DSM 14684

Nocek, B.Chhor, G.Endres, M.Babnigg, G.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribose ABC transporter, substrate binding protein
A
299Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)Mutation(s): 1 
Find proteins for D3F6W3 (Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577))
Go to UniProtKB:  D3F6W3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.190 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 61.469α = 90.00
b = 60.536β = 90.00
c = 88.898γ = 90.00
Software Package:
Software NamePurpose
HKL-3000phasing
HKL-3000data reduction
DMmodel building
DMphasing
SHELXphasing
ARP/wARPmodel building
REFMACrefinement
SBC-Collectdata collection
SHELXmodel building
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-29
    Type: Initial release