4KN5

Crystal structure of a putative methylthioadenosine nucleosidase from Weissella paramesenteroides ATCC 33313 (Target NYSGRC-029342 )


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a putative methylthioadenosine nucleosidase from Weissella paramesenteroides ATCC 33313 (Target NYSGRC-029342)

Sampathkumar, P.Ahmed, M.Attonito, J.Bhosle, R.Bonanno, J.Chamala, S.Chowdhury, S.Eromenok, G.Fiser, A.Glenn, A.S.Hammonds, J.Hillerich, B.Himmel, D.M.Khafizov, K.Lafleur, J.Love, J.D.Stead, M.Seidel, R.Toro, R.Morisco, L.L.Sojitra, S.S.Wasserman, S.R.Haapalainen, A.Suarez, J.Schramm, V.L.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Methylthioadenosine nucleosidase
A, B
253Weissella paramesenteroides ATCC 33313Mutation(s): 0 
Gene Names: mtnN
EC: 3.2.2.9
Find proteins for C5RAK4 (Weissella paramesenteroides ATCC 33313)
Go to UniProtKB:  C5RAK4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.179 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 89.252α = 90.00
b = 89.252β = 90.00
c = 127.545γ = 90.00
Software Package:
Software NamePurpose
SHELXphasing
CBASSdata collection
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXEmodel building
SHELXDphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-29
    Type: Initial release
  • Version 1.1: 2013-11-27
    Type: Structure summary
  • Version 1.2: 2017-11-15
    Type: Refinement description