4KD5

substrate binding domain of putative molybdenum ABC transporter from Clostridium difficile


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4999 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Substrate binding domain of putative molybdenum ABC transporter from Clostridium difficile 630

Maltseva, N.Kim, Y.Grimshaw, S.Anderson, W.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ABC-type transport system, molybdenum-specific extracellular solute-binding protein
C, A, B, D
233Peptoclostridium difficile (strain 630)Mutation(s): 0 
Gene Names: modA
Find proteins for Q18A64 (Peptoclostridium difficile (strain 630))
Go to UniProtKB:  Q18A64
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SBT
Query on SBT

Download SDF File 
Download CCD File 
B, C
2-BUTANOL
C4 H10 O
BTANRVKWQNVYAZ-BYPYZUCNSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
B, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMT
Query on FMT

Download SDF File 
Download CCD File 
C
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 123.644α = 90.00
b = 141.068β = 90.00
c = 122.590γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data collection
HKL-3000phasing
SHELXmodel building
RESOLVEmodel building
HKL-3000data reduction
BUCCANEERphasing
HKL-3000data scaling
PHENIXrefinement
SHELXphasing
BUCCANEERmodel building
SBC-Collectdata collection
RESOLVEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-08
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description