4KCE | pdb_00004kce

Crystal structure of the mitochondrial peroxiredoxin from Leishmania braziliensis in the dimeric form

PDB DOI: https://doi.org/10.2210/pdb4KCE/pdb

Classification: OXIDOREDUCTASE
Organism(s): Leishmania braziliensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-04-24 Released: 2014-05-14
Deposition Author(s): Souza, T.A.C.B., Morais, M.A.B., Giuseppe, P.O., Murakami, M.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free:
0.278 (Depositor), 0.295 (DCC)
R-Value Work:
0.238 (Depositor), 0.246 (DCC)
R-Value Observed:
0.242 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the mitochondrial peroxiredoxin from Leishmania braziliensis in the dimeric form

Souza, T.A.C.B., Morais, M.A.B., Giuseppe, P.O., Murakami, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 47.38 kDa
Atom Count: 2,592
Modeled Residue Count: 331
Deposited Residue Count: 426
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peroxidoxin	A, B	213	Leishmania braziliensis	Mutation(s): 0 Gene Names: LBRM_23_0050 EC: 1.11.1 (PDB Primary Data), 1.11.1.24 (UniProt)
UniProt
Find proteins for A4HCL7 (Leishmania braziliensis) Explore A4HCL7 Go to UniProtKB: A4HCL7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A4HCL7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.79 Å
R-Value Free: 0.278 (Depositor), 0.295 (DCC)
R-Value Work: 0.238 (Depositor), 0.246 (DCC)
R-Value Observed: 0.242 (Depositor)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 132.485	α = 90
b = 132.485	β = 90
c = 44.627	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
MOLREP	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-05-14

Deposition Author(s):

Souza, T.A.C.B.

Revision History (Full details and data files)

Version 1.0: 2014-05-14
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.