Download MendeleyA new class of type IIA topoisomerase inhibitors with broad-spectrum antibacterial activity
Tari, L.W., Bensen, D.C., Finn, J.To be published.
4K4O
The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor
- PDB DOI: 10.2210/pdb4K4O/pdb
- Classification: ISOMERASE/ISOMERASE INHIBITOR
- Organism(s): Enterococcus faecalis V583
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-04-12 Released: 2014-01-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.196
- R-Value Work: 0.178
- R-Value Observed: 0.179
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA gyrase subunit B | A | 215 | Enterococcus faecalis V583 | Mutation(s): 0 Gene Names: EF_0005, gyrB EC: 5.99.1.3 (PDB Primary Data), 5.6.2.2 (UniProt) |  |
UniProt | |||||
Find proteins for Q839Z1 (Enterococcus faecalis (strain ATCC 700802 / V583)) Explore Q839Z1 Go to UniProtKB: Q839Z1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q839Z1 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DOO Query on DOO | B [auth A] | 6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine C22 H23 F N8 O ACMIJDVJWLMBCX-PXAZEXFGSA-N |  | Ligand Interaction | |
| TBU Query on TBU | C [auth A] | TERTIARY-BUTYL ALCOHOL C4 H10 O DKGAVHZHDRPRBM-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.196
- R-Value Work: 0.178
- R-Value Observed: 0.179
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.45 | α = 90 |
| b = 58.35 | β = 90 |
| c = 65.55 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2014-01-15 Deposition Author(s): Bensen, D.C., Akers-Rodriguez, S., Lam, T., Tari, L.W.
Revision History (Full details and data files)
- Version 1.0: 2014-01-15
Type: Initial release
