4K34 | pdb_00004k34

Crystal structures of CusC review conformational changes accompanying folding and transmembrane channel formation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 
    0.249 (Depositor), 0.243 (DCC) 
  • R-Value Work: 
    0.188 (Depositor), 0.186 (DCC) 
  • R-Value Observed: 
    0.191 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 4K34

This is version 1.2 of the entry. See complete history

Literature

Crystal Structures of CusC Review Conformational Changes Accompanying Folding and Transmembrane Channel Formation.

Lei, H.T.Bolla, J.R.Bishop, N.R.Su, C.C.Yu, E.W.

(2014) J Mol Biology 426: 403-411

  • DOI: https://doi.org/10.1016/j.jmb.2013.09.042
  • Primary Citation Related Structures: 
    4K34, 4K7K, 4K7R

  • PubMed Abstract: 

    Gram-negative bacteria, such as Escherichia coli, frequently utilize tripartite efflux complexes in the RND (resistance-nodulation-cell division) family to expel diverse toxic compounds from the cell. These complexes span both the inner and outer membranes of the bacterium via an α-helical, inner membrane transporter; a periplasmic membrane fusion protein; and a β-barrel, outer membrane channel. One such efflux system, CusCBA, is responsible for extruding biocidal Cu(I) and Ag(I) ions. To remove these toxic ions, the CusC outer membrane channel must form a β-barrel structural domain, which creates a pore and spans the entire outer membrane. We here report the crystal structures of wild-type CusC, as well as two CusC mutants, suggesting that the first N-terminal cysteine residue plays an important role in protein-membrane interactions and is critical for the insertion of this channel protein into the outer membrane. These structures provide insight into the mechanisms on CusC folding and transmembrane channel formation. It is found that the interactions between CusC and membrane may be crucial for controlling the opening and closing of this β-barrel, outer membrane channel.


  • Organizational Affiliation
    • Department of Chemistry, Department of Physics & Astronomy, Iowa State University, Ames, IA 50011, USA.

Macromolecule Content 

  • Total Structure Weight: 98.75 kDa 
  • Atom Count: 5,814 
  • Modeled Residue Count: 732 
  • Deposited Residue Count: 892 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cation efflux system protein CusC
A, B
446Escherichia coli K-12Mutation(s): 1 
Gene Names: b0572cusCEscherichia coliibeBJW0561ylcB
Membrane Entity: Yes 
UniProt
Find proteins for P77211 (Escherichia coli (strain K12))
Explore P77211 
Go to UniProtKB:  P77211
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP77211
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free:  0.249 (Depositor), 0.243 (DCC) 
  • R-Value Work:  0.188 (Depositor), 0.186 (DCC) 
  • R-Value Observed: 0.191 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.881α = 90
b = 105.032β = 101.06
c = 72.359γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
DENZOdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2013-10-16 
  • Deposition Author(s): Su, C.-C.

Revision History  (Full details and data files)

  • Version 1.0: 2013-10-16
    Type: Initial release
  • Version 1.1: 2014-01-22
    Changes: Database references
  • Version 1.2: 2024-02-28
    Changes: Data collection, Database references