4JYY

Crystal structure of the azide and iron substituted Clostrium difficile SOD2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.101 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the azide and iron substituted Clostrium difficile SOD2 complex

Li, W.Ying, T.L.Wang, C.L.Zhao, Y.Wang, H.F.Tan, X.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Superoxide dismutase
A
208Peptoclostridium difficile (strain 630)Mutation(s): 0 
Gene Names: sodA
EC: 1.15.1.1
Find proteins for Q186I6 (Peptoclostridium difficile (strain 630))
Go to UniProtKB:  Q186I6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AZI
Query on AZI

Download SDF File 
Download CCD File 
A
AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.101 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.182 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 80.375α = 90.00
b = 80.375β = 90.00
c = 250.532γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
ADSCdata collection
PHASESphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-02
    Type: Initial release