4JYK

Structure of E. coli Transcriptional Regulator RutR with bound uracil


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.120 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of E. coli Transcriptional Regulator RutR with bound uracil

Cooper, D.R.Knapik, A.A.Petkowski, J.J.Porebski, P.J.Osinski, T.Almo, S.C.Minor, W.New York Structural Genomics Research Consortium (NYSGRC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HTH-type transcriptional regulator RutR
A, B
212Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: rutR (ycdC)
Find proteins for P0ACU2 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ACU2
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
URA
Query on URA

Download SDF File 
Download CCD File 
A, B
URACIL
C4 H4 N2 O2
ISAKRJDGNUQOIC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 43.150α = 90.00
b = 86.140β = 106.23
c = 69.019γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
MOLREPphasing
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-14
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description